Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs61973924 chr13:114838888 C/T 0.00012 170 25.53 25.52 3.17 KM Plot
PCPG rs62045229 chr15:56280869 G/C 8.43E-6 176 24.7 26.53 25.17 KM Plot
PCPG rs62045232 chr15:56284419 A/G 0.000455 176 24.85 26.53 21.55 KM Plot
PCPG rs62045239 chr15:56294642 G/A 0.000409 178 25 25.87 21.55 KM Plot
PCPG rs62046379 chr15:56299233 G/A 0.000475 174 24.85 26.53 21.55 KM Plot
PCPG rs62046381 chr15:56300281 T/G 0.000409 178 25 25.87 21.55 KM Plot
PCPG rs62046383 chr15:56303623 C/T 0.000409 178 25 25.87 21.55 KM Plot
PCPG rs62046386 chr15:56305252 G/A 0.000418 177 25 26.53 21.55 KM Plot
PCPG rs62046389 chr15:56307688 T/G 0.000443 177 25 25.7 21.55 KM Plot
PCPG rs62046390 chr15:56308506 G/A 7.42E-6 177 24.85 26.53 25.17 KM Plot
PCPG rs62046391 chr15:56310688 C/T 0.000418 177 25 26.53 21.55 KM Plot
PCPG rs62046392 chr15:56312554 C/G 0.000418 177 25 26.53 21.55 KM Plot
PCPG rs62046393 chr15:56315385 A/G 0.000453 176 25 25.87 21.55 KM Plot
PCPG rs62046394 chr15:56316356 C/A 0.000453 176 25 25.87 21.55 KM Plot
PCPG rs62046397 chr15:56321302 G/A 7.6E-6 177 24.85 26.53 25.17 KM Plot